| Huber Lake | Asotin, WA | 7.7 miles | NW |
| Blue Lake | Nez Perce, ID | 11.9 miles | NE |
| Mud Lake | Nez Perce, ID | 11.9 miles | NE |
| Lake Waha | Nez Perce, ID | 12.1 miles | NE |
| Frog Pond | Wallowa, OR | 18.7 miles | SE |
| Tule Lake | Asotin, WA | 19.4 miles | SW |
| Hidden Lake | Nez Perce, ID | 20.2 miles | NE |
| Baker Pond | Garfield, WA | 25.2 miles | NW |
| Hendersons Pond | Wallowa, OR | 29 miles | SW |
| Beaver Lake | Columbia, WA | 29.7 miles | NW |
| Wade Pond | Wallowa, OR | 29.7 miles | SW |
| Big Four Lake | Columbia, WA | 29.7 miles | NW |
| Blue Lake | Columbia, WA | 31.4 miles | NW |
| Atwater Lake | Latah, ID | 42.9 miles | NE |
| Tolo Lake | Idaho, ID | 42.9 miles | SE |
| Clear Lake | Wallowa, OR | 49 miles | SE |
| Dead Horse Lake | Wallowa, OR | 49.8 miles | SE |
| Downey Lake | Wallowa, OR | 51 miles | SE |
| Sprudy Lake | Wallowa, OR | 51.1 miles | SW |
| Marshman Lake | Wallowa, OR | 51.2 miles | SW |
| Nuxall Lake | Wallowa, OR | 51.3 miles | SW |
| Wallowa Ponds | Wallowa, OR | 51.3 miles | SW |
| Hayden Lake | Wallowa, OR | 51.7 miles | SW |
| Roulet Pond | Union, OR | 54 miles | SW |
| Crater Lake | Idaho, ID | 55.9 miles | SE |
| Knights Pond | Wallowa, OR | 56 miles | SW |
| Kinney Lake | Wallowa, OR | 57.1 miles | SW |
| Little Storm Lake | Wallowa, OR | 57.6 miles | SW |
| Maxwell Lake | Union, OR | 57.9 miles | SW |
| Legore Lake | Wallowa, OR | 59 miles | SW |
| Papoose Lake | Idaho, ID | 59.5 miles | SE |
| Lily Pad Lake | Idaho, ID | 59.8 miles | SE |
| Wood Lake | Wallowa, OR | 60.2 miles | SW |
| Papoose Lake | Wallowa, OR | 60.3 miles | SW |
| Francis Lake | Wallowa, OR | 60.3 miles | SW |
| Konkols Pond | Clearwater, ID | 60.3 miles | NE |
| Basin Lake | Idaho, ID | 60.3 miles | SE |
| Nut Basin Lake | Idaho, ID | 60.6 miles | SE |
| Shelf Lake | Idaho, ID | 60.6 miles | SE |
| Deadman Lake | Wallowa, OR | 60.8 miles | SW |
| Pampa Pond | Whitman, WA | 60.8 miles | NW |
| Gem Lake | Idaho, ID | 61 miles | SE |
| Echo Lake | Idaho, ID | 61.1 miles | SE |
| Seven Devils Lake | Idaho, ID | 61.2 miles | SE |
| Rock Island Lake | Idaho, ID | 61.2 miles | SE |
| Appendix Lake | Idaho, ID | 61.3 miles | SE |
| Chimney Lake | Wallowa, OR | 61.3 miles | SW |
| Bear Lake | Wallowa, OR | 61.3 miles | SW |
| Hobo Lake | Wallowa, OR | 61.4 miles | SW |
| Quad Lake | Idaho, ID | 61.4 miles | SE |
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